У меня так.
правда в вебпаке настройки есть для переменных
REM copyapp.cmd
REM test\test\bin\Release\netcoreapp3.1\linux-x64\publish
ssh -i "tsyuha.pem" ubuntu@ec2-33-122-100-11.eu-central-1.compute.amazonaws.com sudo systemctl stop test
scp -i "tsyuha.pem" test\test\bin\Release\netcoreapp3.1\linux-x64\publish\test ubuntu@ec2-33-122-100-11.eu-central-1.compute.amazonaws.com:/var/www/www-root/data/www/test.net/test/test
scp -i "tsyuha.pem" test\test\bin\Release\netcoreapp3.1\linux-x64\publish\test.pdb ubuntu@ec2-33-122-100-11.eu-central-1.compute.amazonaws.com:/var/www/www-root/data/www/test.net/test/test.pdb
scp -i "tsyuha.pem" test\test\bin\Release\netcoreapp3.1\linux-x64\publish\appsettings.json ubuntu@ec2-33-122-100-11.eu-central-1.compute.amazonaws.com:/var/www/www-root/data/www/test.net/test/appsettings.json
ssh -i "tsyuha.pem" ubuntu@ec2-33-122-100-11.eu-central-1.compute.amazonaws.com sudo systemctl start test
ssh -i "tsyuha.pem" ubuntu@ec2-33-122-100-11.eu-central-1.compute.amazonaws.com sudo systemctl -l status test