Решил обновить Mysql, после обновления база вообще не доступна и не стартует( лог ниже.
160424 7:48:10 [Note] /usr/libexec/mysqld: Shutdown complete
160424 07:48:10 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended
160424 07:48:23 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql
160424 7:48:23 [Note] libgovernor.so not found
160424 7:48:23 [Note] /usr/libexec/mysqld (mysqld 5.5.49-cll-lve) starting as process 882 ...
160424 7:48:23 [Note] Plugin 'InnoDB' is disabled.
160424 7:48:23 [Note] Plugin 'FEDERATED' is disabled.
160424 7:48:23 [ERROR] /usr/libexec/mysqld: unknown option '--skip-locking'
160424 7:48:23 [ERROR] Aborting
160424 7:48:23 [Note] /usr/libexec/mysqld: Shutdown complete
160424 07:48:23 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended
160424 07:48:35 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql
160424 7:48:35 [Note] libgovernor.so not found
160424 7:48:35 [Note] /usr/libexec/mysqld (mysqld 5.5.49-cll-lve) starting as process 1322 ...
160424 7:48:35 [Note] Plugin 'InnoDB' is disabled.
160424 7:48:35 [Note] Plugin 'FEDERATED' is disabled.
160424 7:48:35 [ERROR] /usr/libexec/mysqld: unknown option '--skip-locking'
160424 7:48:35 [ERROR] Aborting
160424 7:48:35 [Note] /usr/libexec/mysqld: Shutdown complete
160424 07:48:35 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended