Надо их пересобрать из исходников, тогда заработают.
Необходим свежий Xcode.

curl -O https://distfiles.macports.org/MacPorts/MacPorts-2.2.0.tar.bz2
tar jxvf MacPorts-2.2.0.tar.bz2
cd MacPorts-2.2.0
CC=/usr/bin/cc ./configure --prefix=/opt/local --with-install-user=root --with-install-group=admin --with-directory-mode=0755 --enable-readline \
--with-tclpackage=/Library/Tcl \
--with-tcl=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/System/Library/Frameworks/Tcl.framework \
--with-tclinclude=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/System/Library/Frameworks/Tcl.framework/Headers
make
sudo make install

После пересборки обновить и запустить upgrade.